PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00004.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 222aa MW: 23097.2 Da PI: 6.2327

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00004.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.4	1.3e-29	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l a+p ++r+++++sl+yeA+ r+ +Pv+ Zmw_sc00004.1.g00230.1.sm.mkhc 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLGAVPLQHRPALFRSLLYEACGRTINPVS 80 6*******************9999888899******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 Ga+g++++++++l+q++ae++l++e Zmw_sc00004.1.g00230.1.sm.mkhc 81 GAIGLMWTGNWDLCQAAAEAVLRGE 105 *****************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.899	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-23	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLGAVPLQHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGESLRAL SAIPAAFTDR 120 DMAGLYGNVD VAASSSPEHS SSTPSRKRKN CGRFLAGTDD CQPPAGLLLQ PCELHLCLTP 180 ASLPAGGRPG CGTSNEDSGT TTCEEASGDV EAGVPTLLNL FS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177395.1	1e-109	LOB domain-containing protein 39-like
TrEMBL	A0A3B6JFF0	1e-107	A0A3B6JFF0_WHEAT; Uncharacterized protein
TrEMBL	A0A453HER9	1e-107	A0A453HER9_AEGTS; Uncharacterized protein
STRING	Traes_4DS_9575221BB.3	1e-108	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8450	30	41