PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00004.1.g00340.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 284aa MW: 30541.2 Da PI: 8.473

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00004.1.g00340.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.7	1.5e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC+++Cv+apyfp ++p+kfa vh++FGasnv kll++lp+ +reda++sl+yeA+ar+rdPvyG+v+ i+ Zmw_sc00004.1.g00340.1.am.mk 11 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFASVHRVFGASNVFKLLNKLPHAQREDAVNSLAYEADARLRDPVYGCVSYIS 91 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq +++q++ ela++++e Zmw_sc00004.1.g00340.1.am.mk 92 VLQLRIKQARDELAAARKE 110 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MSSSSSSSSS PCAACKLLRR KCTQGCVFAP YFPPDNPAKF ASVHRVFGAS NVFKLLNKLP 60 HAQREDAVNS LAYEADARLR DPVYGCVSYI SVLQLRIKQA RDELAAARKE LAAYIGPAAY 120 APFAPAPTQY HHHAHATASP QNAQGHGQQQ QMIAQQHQHL LHHQQLAEAQ QLAAAVEVAR 180 EQDFMMRQAA PQAAAYAHTV PGSNAGPTVA VVPPDESRTS RYERGFLFQQ QQQPPSQAQT 240 AVALTYQMAW SPPPSSSSQP PAVASHQQQA EGSYEGGGGV VPPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	4	114	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	4	114	4	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704292.1	1e-105	LOB domain-containing protein 6
Swissprot	Q9FKZ3	1e-55	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1E5VYJ4	1e-108	A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
STRING	Si036905m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]