PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00006.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 620aa MW: 68314.9 Da PI: 7.2707

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00006.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.6e-29	508	559	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Zmw_sc00006.1.g00100.1.sm.mk 508 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 559 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.894	496	579	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-25	511	559	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MEGGGGGGGD PRSSVSLART SSEGDLDLLE QLLSGDNAWF EVASRSPNSL ASPPPTTTFF 60 AAADATATNA NTAGWLLQTG PSSVRERFDQ ALSYIRETQS DGDVLVQLWV PVKGHDGQLL 120 LTTSGQPFTL DQRSDSLIRF REVSTKYHFS ADVMSGTPGL PGRVFIGRLP EWSPDVRYFT 180 SHEYPRVSHA QILDVHGTMG LPVFEKGSYS CLGVIELIMT KQKLNFTPEL NAICSALQFS 240 SASYKDALPE ILEVLKAACL IHKLPLAQTW VTCAQQGKRG SRHSDENYRY CISPIDEACF 300 VNEPRMQNFH EACSEHHLLR GQGVAGKAFT TNQPCFLPDI GSSTKLEYPL SHHAKIFNLK 360 GAVAIRLRCT RTGSADFVLE FFLPTDCEAL EEQKAVLDSL SGTMRSVCRT LRVVTDKEME 420 NEAVREMNEL NSFTPQGKNR VEEPSFGDNS RDRRGETSWT SLAETSQHES EFAALRMHGL 480 VPSEGQDPST SGVQTAAEGS KAKRRTKAEK TVSLQVLRQY FAGSLKDAAR SLGVCPTTLK 540 RICRQHGITR WPSRKIKKVD HSLKKLQQII DSVHGAETAF QLNTLYKDLT NTSISSDNNL 600 SGSITSSFHA FKDLFHSQKI

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MEGGGGGGGD PRSSVSLART SSEGDLDLLE QLLSGDNAWF EVASRSPNSL ASPPPTTTFF  60
AAADATATNA NTAGWLLQTG PSSVRERFDQ ALSYIRETQS DGDVLVQLWV PVKGHDGQLL  120
LTTSGQPFTL DQRSDSLIRF REVSTKYHFS ADVMSGTPGL PGRVFIGRLP EWSPDVRYFT  180
SHEYPRVSHA QILDVHGTMG LPVFEKGSYS CLGVIELIMT KQKLNFTPEL NAICSALQFS  240
SASYKDALPE ILEVLKAACL IHKLPLAQTW VTCAQQGKRG SRHSDENYRY CISPIDEACF  300
VNEPRMQNFH EACSEHHLLR GQGVAGKAFT TNQPCFLPDI GSSTKLEYPL SHHAKIFNLK  360
GAVAIRLRCT RTGSADFVLE FFLPTDCEAL EEQKAVLDSL SGTMRSVCRT LRVVTDKEME  420
NEAVREMNEL NSFTPQGKNR VEEPSFGDNS RDRRGETSWT SLAETSQHES EFAALRMHGL  480
VPSEGQDPST SGVQTAAEGS KAKRRTKAEK TVSLQVLRQY FAGSLKDAAR SLGVCPTTLK  540
RICRQHGITR WPSRKIKKVD HSLKKLQQII DSVHGAETAF QLNTLYKDLT NTSISSDNNL  600
SGSITSSFHA FKDLFHSQKI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800526.1	0.0	protein NLP1-like isoform X1
Refseq	XP_025800527.1	0.0	protein NLP1-like isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A1E5UP36	0.0	A0A1E5UP36_9POAL; Protein NLP5
STRING	Pavir.Bb02544.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]