PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00009.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24413.2 Da    PI: 9.812
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00009.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.3e-121150342
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  + nks r   + kR++g+ K A+ L +LC+++++v+++++
  Zmw_sc00009.1.g00230.1.am.mk 11 SANKSIRRAEYKKRQEGLVKMANDLTTLCGIKACVVVYGE 50
                                  67999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-5160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.404150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-13161IPR002100Transcription factor, MADS-box
CDDcd002661.63E-17278No hitNo description
PfamPF003193.8E-111352IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAPKKVNLQW SANKSIRRAE YKKRQEGLVK MANDLTTLCG IKACVVVYGE GKPQPEVRKF  60
DHENCERETL FLLHKTMTGH HTSLVDLTNQ DLIGIKCMVE AKTKKIKECL QQLDIKQGQT  120
LQEPLHWNKK MSHAHEDFLK KRISKLRHLV RRWYHENQDR ETLILFHESM VSDHLGLVGM  180
TRNSSRTGLS TATNTSGSVG CDVLQHYNQG GLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317822.11e-29agamous-like MADS-box protein AGL80
TrEMBLA0A1B6PT903e-28A0A1B6PT90_SORBI; Uncharacterized protein
STRINGSb05g023895.11e-29(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4257633