PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00013.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 203aa    MW: 22261.9 Da    PI: 7.0745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00013.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-1954104256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Zmw_sc00013.1.g00080.1.am.mk  54 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARSIRGA 104
                                   6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-2254112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-3254112IPR001471AP2/ERF domain
CDDcd000188.63E-1954113No hitNo description
PROSITE profilePS5103224.2154111IPR001471AP2/ERF domain
SMARTSM003803.7E-3654117IPR001471AP2/ERF domain
PfamPF008471.1E-1255103IPR001471AP2/ERF domain
PRINTSPR003673.8E-115566IPR001471AP2/ERF domain
PRINTSPR003673.8E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MCGGAIIYDY IPARRRVSSA DFWPDDSDES DHHHHHTAER AAARPKARRE RKNQYRGIRQ  60
RPWGKWAAEI RDPVKGVRVW LGTYPTAEAA ARAYDRAARS IRGAKAKVNF PNDVAAPKAA  120
PAAAAAPPAP APKVEPSDEV KELSEELMAY ENYMNFLGIP YMEGGNAAAP AAAAVEEPSA  180
PAPVSGLWSF EDYYQPSLAL FTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2154114566ATERF1
3gcc_A2e-2154114566ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.13e-82uncharacterized protein LOC100193143
TrEMBLB4FDY97e-81B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2
TrEMBLK4JRM47e-81K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P011e-81(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540