PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00014.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 221aa MW: 23818 Da PI: 7.2371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00014.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9e-06	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+++ L H+++H Zmw_sc00014.1.g00270.1.sm.mk 77 HRCSGCGKVFPSHQALGGHMSSH 99 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.6E-9	77	99	No hit	No description
PROSITE profile	PS50157	10.159	77	104	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.7E-10	77	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.6E-9	141	168	No hit	No description
Pfam	PF13912	1.8E-13	145	169	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	146	168	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.349	146	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MAVDTVLDAP AGLQRRLSCR DLEYEGDQVQ AWAKRKRSSR RHPRAPTEEE HLALCLLMLG 60 RDHRDCEDQD PAPATEHRCS GCGKVFPSHQ ALGGHMSSHR SRPTPAAVAT ATTITTVVED 120 PVVATAASSA STPATSCSTS GTGRVHECSV CKKTFPTGQA LGGHKRCHYL GAIVTPERGF 180 DLNIPALPDI SEWCVPVTVA EEEDVVLSPL AFKKPRFMIP A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562286.1	3e-56	zinc finger protein 1
TrEMBL	A0A0A9AQT5	5e-60	A0A0A9AQT5_ARUDO; Uncharacterized protein
STRING	BRADI1G14750.1	1e-55	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1022	36	113