PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00016.1.g00680.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 246aa MW: 27066.2 Da PI: 7.7449

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00016.1.g00680.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.1e-06	11	59	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL ++l + + + Ka+iL A + +++L Zmw_sc00016.1.g00680.1.es.mkhc 11 KNHKAEREKLKRDQLNDLFLELSSMLDLD----RQNNGKASILGDAARVLQDL 59 677899********************997....67889999999999988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-11	6	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.98E-4	7	64	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-7	7	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.109	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0011	15	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
DQRSQDKNPK KNHKAEREKL KRDQLNDLFL ELSSMLDLDR QNNGKASILG DAARVLQDLV 60 TQVESLRKEQ SALLAERQYV SSEKNELLDE NATIKARISE LQHELCARMG NNSISLRSIA 120 MSHPMANSTN IGIATQPMQH QLWSSIPNLS TVTMTQSTNT VSTLHSQQHR PALVGQAHAS 180 RPQELQLFPG TSSPPEHECP SLRSAPTSTS SLTDSLPGQL QLSLPQSSLE GSSNSVSGSR 240 REQKNG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826529.1	1e-106	transcription factor BHLH062-like isoform X1
TrEMBL	A0A0A9CGL0	1e-119	A0A0A9CGL0_ARUDO; Uncharacterized protein
STRING	Si026752m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24