PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00024.1.g00510.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 771aa MW: 81914.7 Da PI: 8.0565

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00024.1.g00510.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	48.8	1.2e-15	406	493	87	173
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetge 163 sP+++++ +aN aI eav ++++H +Dfd+s + Q +aL q La p+ sl++T++ +p+s ++ +l +++e Zmw_sc00024.1.g00510.1.am.mk 406 GSPCFRLALHAANVAIIEAVGDHRAIHLVDFDVSAP-QHAALVQYLAGVPG--TSLKVTAITDPTSPfaqsQTATLPAVEE 483 59*****************************987.99****9655..59****998889999999** PP GRAS 164 rLakfAeelg 173 rL+k+A+++g Zmw_sc00024.1.g00510.1.am.mk 484 RLKKLADRVG 493 ****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02309	1.0E-17	140	268	IPR033389	AUX/IAA domain
Pfam	PF03514	4.2E-13	406	493	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MNLVPFETPP LGRQEIVLAT TTATNATMSK DASSRSAIFD GHLDLSLGIS MTGGSSGCVL 60 AGCRTGAKAS DGRCGGNSTR DEAGCMSSGV TTVVTPVNGL SAGHGLVADD LKAGTGWTSG 120 FLPSLTRFMH PCSLAARQQK AAAEQTPLAA YMPSEARTIP LPSPVGWPPV LTSRRNLITA 180 IMHTTKSDGT GMADGPKGVT MQPADEKTNG TGVAETQPLQ ANMFAKVHME GYTIARKINL 240 RAHGSYDSLS QALTKMTRNF FSRKSSHGRC RGAISLGFTA PLRPCIQSLS RSSTSMYVGC 300 RRVAKGTTGK HAGYDAALTR GATAVESMAR GPARCRPALS PLPKLSPVHS CRESTPPAPH 360 PDSCTPVFQP PAASPPWSHR RGHAWRWPAR GEQRGPGGAD CSGVDGSPCF RLALHAANVA 420 IIEAVGDHRA IHLVDFDVSA PQHAALVQYL AGVPGTSLKV TAITDPTSPF AQSQTATLPA 480 VEERLKKLAD RVGNAGLDDG GSQGRGRREL LQHPCSAQSQ KGTRRQRQDN HSVEVQGLMY 540 NYVVLLKNHG AMVRARRANV PPNEAEQIRT AIKESLRDIG FKDCSSTPFS RESGSSPPIV 600 LDEYDDGDDD WTAPGSFLID ELQMEEEEVV AFKRKLSFRG KGGKRKRNRS DEDEEDFIDD 660 NGSDSSPPSS LVYADSGESS SDNEDDGVDA VIGDIHGDVG AGCSGSKEGR FTMSGEGSEG 720 RSMAGVVVVR TTAADGSTRR RWINVTKEDI LFARTERPPN LTTGPHHRAA D

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MNLVPFETPP LGRQEIVLAT TTATNATMSK DASSRSAIFD GHLDLSLGIS MTGGSSGCVL  60
AGCRTGAKAS DGRCGGNSTR DEAGCMSSGV TTVVTPVNGL SAGHGLVADD LKAGTGWTSG  120
FLPSLTRFMH PCSLAARQQK AAAEQTPLAA YMPSEARTIP LPSPVGWPPV LTSRRNLITA  180
IMHTTKSDGT GMADGPKGVT MQPADEKTNG TGVAETQPLQ ANMFAKVHME GYTIARKINL  240
RAHGSYDSLS QALTKMTRNF FSRKSSHGRC RGAISLGFTA PLRPCIQSLS RSSTSMYVGC  300
RRVAKGTTGK HAGYDAALTR GATAVESMAR GPARCRPALS PLPKLSPVHS CRESTPPAPH  360
PDSCTPVFQP PAASPPWSHR RGHAWRWPAR GEQRGPGGAD CSGVDGSPCF RLALHAANVA  420
IIEAVGDHRA IHLVDFDVSA PQHAALVQYL AGVPGTSLKV TAITDPTSPF AQSQTATLPA  480
VEERLKKLAD RVGNAGLDDG GSQGRGRREL LQHPCSAQSQ KGTRRQRQDN HSVEVQGLMY  540
NYVVLLKNHG AMVRARRANV PPNEAEQIRT AIKESLRDIG FKDCSSTPFS RESGSSPPIV  600
LDEYDDGDDD WTAPGSFLID ELQMEEEEVV AFKRKLSFRG KGGKRKRNRS DEDEEDFIDD  660
NGSDSSPPSS LVYADSGESS SDNEDDGVDA VIGDIHGDVG AGCSGSKEGR FTMSGEGSEG  720
RSMAGVVVVR TTAADGSTRR RWINVTKEDI LFARTERPPN LTTGPHHRAA D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	632	646	KRKLSFRGKGGKRKR