PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00026.1.g00540.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 539aa MW: 59240.7 Da PI: 4.0875

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00026.1.g00540.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55	2.3e-17	17	86	2	71
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 CaaC+ +rrkC++dCv+ p f e+ ++f +v ++F a+ v+ +l++l ++er +a++ lv +A +r+ Zmw_sc00026.1.g00540.1.sm.mk 17 CAACRQMRRKCVPDCVFVPFFGPEDGERFYAVDRIFCARYVSDMLEDLAPHERWNAVEMLVHQATLGMRN 86 ****************************************************************987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.452	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-16	17	87	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MSSSSAAPET EPQSQDCAAC RQMRRKCVPD CVFVPFFGPE DGERFYAVDR IFCARYVSDM 60 LEDLAPHERW NAVEMLVHQA TLGMRNQQMA EAQQPQRADG RVYGNQQTVP QVAGSQNSAA 120 VDQDQLRMKM MAQVRRNAAA ARKAFFPQLA QLQQMRAAAE VAMNPDMMMW QATAAPTQQM 180 YQAEAQQLPA STLGCATQRD MMMQQATAAA AAQNYPYSVQ QYPEMGLEQQ HQQNQQMAEA 240 ANLATAAEAA MDQEILEYLM MPAPSPAAAA ATEQSNYQLG QQQLPEPEKE HALELPAADE 300 FGWDEDLMTR QFTEAAAPAG VTTDEYLMMT TTMVELQDVA GGQQNGHDHT ELYANMGQGH 360 QLGQQLPDPE TEHALEVPAA DEFGWDEDLM TRQMVEAAAT AGVTADEYLM MTATMVELQD 420 VAGGQQNGHD HAEQYANMGH GHQLGQQLPD PESTEQALEL RAADEFGWDE DLMTRQMAEA 480 AATAGVTADE YLMMTTTTLE LMDVPGGQQN GHDHAERYAN MGRGNTDLQR NGGGAVVQH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MSSSSAAPET EPQSQDCAAC RQMRRKCVPD CVFVPFFGPE DGERFYAVDR IFCARYVSDM  60
LEDLAPHERW NAVEMLVHQA TLGMRNQQMA EAQQPQRADG RVYGNQQTVP QVAGSQNSAA  120
VDQDQLRMKM MAQVRRNAAA ARKAFFPQLA QLQQMRAAAE VAMNPDMMMW QATAAPTQQM  180
YQAEAQQLPA STLGCATQRD MMMQQATAAA AAQNYPYSVQ QYPEMGLEQQ HQQNQQMAEA  240
ANLATAAEAA MDQEILEYLM MPAPSPAAAA ATEQSNYQLG QQQLPEPEKE HALELPAADE  300
FGWDEDLMTR QFTEAAAPAG VTTDEYLMMT TTMVELQDVA GGQQNGHDHT ELYANMGQGH  360
QLGQQLPDPE TEHALEVPAA DEFGWDEDLM TRQMVEAAAT AGVTADEYLM MTATMVELQD  420
VAGGQQNGHD HAEQYANMGH GHQLGQQLPD PESTEQALEL RAADEFGWDE DLMTRQMAEA  480
AATAGVTADE YLMMTTTTLE LMDVPGGQQN GHDHAERYAN MGRGNTDLQR NGGGAVVQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	6	80	1	75	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	6	80	1	75	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36282	3	4