PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00026.1.g00620.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 144aa MW: 16118.5 Da PI: 10.5419

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00026.1.g00620.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	41.5	4.3e-13	86	122	3	40
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 ++YVNaKQ+++Il+RR +Rak+++e+++ + +rk h Zmw_sc00026.1.g00620.1.sm.mk 86 AIYVNAKQFKGILRRRLARAKAARERRV-SMKRKVTNH 122 69**************************.666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	0.0021	82	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	13.282	83	118	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.5E-12	86	123	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MAFWVRSGVS YLGKQLAFHE PSAPTSFAYP AWQQDYSGCF DLALGQSMAC NVDQRHDYGV 60 CSTYGAHVVG RRKVLLQPAI TVEEPAIYVN AKQFKGILRR RLARAKAARE RRVSMKRKVT 120 NHAAESFSSR SSWSIPALLL PLTN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645550.1	6e-30	nuclear transcription factor Y subunit A-2
TrEMBL	A0A0A9ILA9	2e-43	A0A0A9ILA9_ARUDO; Uncharacterized protein
STRING	OPUNC07G03530.1	5e-32	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47196	3	3