PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00032.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 257aa    MW: 27060.4 Da    PI: 4.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00032.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183384156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Zmw_sc00032.1.g00140.1.am.mk 33 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 84
                                  5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-293392No hitNo description
PfamPF008478.8E-113483IPR001471AP2/ERF domain
PROSITE profilePS5103221.5623491IPR001471AP2/ERF domain
SMARTSM003801.2E-323497IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-213491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-293491IPR001471AP2/ERF domain
PRINTSPR003671.3E-83546IPR001471AP2/ERF domain
PRINTSPR003671.3E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMNFSSYFSS SSSSDKKSSS SRRGQQPDTT NTTRYLGVRR RPWGRYAAEI RDPATKERHW  60
LGTFDTAEEA AVAYDRAARS LRGARARTNF AYPDLPLGSS VTPYLSPDLT SGDNSAQLLQ  120
PFYAADPAAA LANPAANGAA VKDDYDYGYS DADMNSLMDD IAIPDDLSAM GGDCGGAMMD  180
MSSMYGTGAA NAGAGGGWCD ASEFGGYGAG ASTTAPGAHG MYFEEGHVHS PLFSPMPAVD  240
DACADGFQLG GSSSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-183590662ATERF1
3gcc_A4e-183590662ATERF1
5wx9_A4e-18341011481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152173.11e-104AP2 domain containing protein
TrEMBLA0A3L6Q9Q71e-102A0A3L6Q9Q7_PANMI; Ethylene-responsive transcription factor LEP-like
TrEMBLB6UA411e-102B6UA41_MAIZE; AP2 domain containing protein
STRINGPavir.Gb01913.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397