PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00032.1.g00760.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 172aa MW: 18201.8 Da PI: 9.4533

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00032.1.g00760.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.6	1.1e-13	92	143	43	94
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 grsW++++ +++++ l++GW++F+++ngL+ gD +vF+l+ g ++++ ++ Zmw_sc00032.1.g00760.1.am.mk 92 GRSWDMRF--TGGRQFLRLEAGWRGFAQDNGLRLGDGCVFELVdGAaEGGTVKF 143 8*****..*****************************8846667775444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-16	50	151	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.61E-17	50	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.16E-14	52	149	No hit	No description
PROSITE profile	PS50863	12.548	54	151	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0047	58	151	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-11	67	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSCNAGTSKG KAAVNSAEKS GEAAVGPATG PDSLPVSGKK CAERIQPLSG KPYFSCIVCK 60 SHVRPPFQVV VPRSVAPFLP RRTAPATLTW CGRSWDMRFT GGRQFLRLEA GWRGFAQDNG 120 LRLGDGCVFE LVDGAAEGGT VKFSVQVLRA DVPSAIRERA GGYTSSSPIE ID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975400.1	5e-71	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	4e-62	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A0A9HBU5	4e-84	A0A0A9HBU5_ARUDO; Uncharacterized protein
STRING	Si012575m	6e-67	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]