PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00033.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 382aa MW: 41026.6 Da PI: 6.506

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00033.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg+ F + L H +H Zmw_sc00033.1.g00040.1.am.mk 243 YECPGCGRAFQSYQALGGHRASH 265 99********9999888888777 PP
2	zf-C2H2	10.9	0.0014	322	344	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Zmw_sc00033.1.g00040.1.am.mk 322 FECPICFKVFGSGQALGGHKRSH 344 89**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.9E-6	13	36	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.053	14	36	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.21E-8	14	36	No hit	No description
PROSITE profile	PS50157	10.284	14	37	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.3E-4	14	37	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.21E-8	238	265	No hit	No description
Pfam	PF13912	7.5E-11	242	267	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	243	265	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	243	270	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	245	265	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.889	322	345	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	322	344	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.5E-11	322	345	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	324	344	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDDVVVLGIS SARHTCKVCG KGFPCGRSLG GHMRSHSLAE VAMAEAVADA GADDADAYIN 60 GVMESGYGLR ENPKKTRRLS SEFDRGGEDE CRNHSGEVFS SGKTVSEDVR RHASAGGNFA 120 DGEHEDEAGP DVVEPERKLI TTEAAVPFPE PRRRRRSMRV PAPAPPPATF DKEPVDVARC 180 LIMLSRHTPS RWATDGCGAR NGYYHDAESD DTSAFQYDEV EITNIKKRKP AACLGGDEKR 240 GRYECPGCGR AFQSYQALGG HRASHKRINS SCCTTKVTLY QSEPNVEANT SFSMSSTPAS 300 PEAEDGAAAA VAVNARKISS KFECPICFKV FGSGQALGGH KRSHSIAGEL YERAGAGKFE 360 PEQPLVAARF LDLNLPAPGA ED

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDDVVVLGIS SARHTCKVCG KGFPCGRSLG GHMRSHSLAE VAMAEAVADA GADDADAYIN  60
GVMESGYGLR ENPKKTRRLS SEFDRGGEDE CRNHSGEVFS SGKTVSEDVR RHASAGGNFA  120
DGEHEDEAGP DVVEPERKLI TTEAAVPFPE PRRRRRSMRV PAPAPPPATF DKEPVDVARC  180
LIMLSRHTPS RWATDGCGAR NGYYHDAESD DTSAFQYDEV EITNIKKRKP AACLGGDEKR  240
GRYECPGCGR AFQSYQALGG HRASHKRINS SCCTTKVTLY QSEPNVEANT SFSMSSTPAS  300
PEAEDGAAAA VAVNARKISS KFECPICFKV FGSGQALGGH KRSHSIAGEL YERAGAGKFE  360
PEQPLVAARF LDLNLPAPGA ED

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792036.1	1e-115	zinc finger protein ZAT4-like
TrEMBL	A0A3L6TTF0	1e-117	A0A3L6TTF0_PANMI; Zinc finger protein ZAT4-like
STRING	Pavir.Ia03028.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73