PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00034.1.g00360.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 409aa    MW: 44423.1 Da    PI: 6.9777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00034.1.g00360.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.13.2e-441162481128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekew.yfFskrdkkyatgkrknratk 79 
                                   lp GfrF+Ptdeel+++yL++k+++  +    +++evd+yk+ePwdL p++ +++++ + yfF+ r+ k a+g r+nrat 
  Zmw_sc00034.1.g00360.1.am.mk 116 LPLGFRFRPTDEELLTHYLARKAADVGFAS-AAVREVDLYKAEPWDLlPAAGAGDDDGCrYFFCARRVKFASGLRTNRATP 195
                                   699************************988.78*************95554444555556********************* PP

                           NAM  80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +gyWk+tgkdk vl++    +g   g+kk+Lvfy+grap+g+kt+W+mheyr+
  Zmw_sc00034.1.g00360.1.am.mk 196 AGYWKSTGKDKVVLRHagdeRGVPLGMKKMLVFYRGRAPRGVKTSWIMHEYRM 248
                                   **************9977666677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-49112253IPR003441NAC domain
PROSITE profilePS5100545.397116273IPR003441NAC domain
PfamPF023657.3E-25117248IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
LLPAIINCFA PVARYPPSPP PPVTARRTHL GKTPKPPAAP GSHRIMHASS VSIKPMHTQV  60
SSSDMERAQG SQSPAQQACA FAATRDGQLP ANTNTQMRVP GIGTGNHPRD RPCTGLPLGF  120
RFRPTDEELL THYLARKAAD VGFASAAVRE VDLYKAEPWD LLPAAGAGDD DGCRYFFCAR  180
RVKFASGLRT NRATPAGYWK STGKDKVVLR HAGDERGVPL GMKKMLVFYR GRAPRGVKTS  240
WIMHEYRMFM KKPPGEAIQE QEQETILLPP CADHPQTMST DGKTPAAATA GQNSSSDAEA  300
IAPDDHETYQ DLPPLNHEDL LMNCPETDDT SSSSALAQAT LLFEDVAASS SFDVLPQLLD  360
YEDFPFHSGQ ADTTATAGLG VSELPVEVHC SDPKNPCGGQ ITRWRRDLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-3611624817142NO APICAL MERISTEM PROTEIN
1ut4_B3e-3611624817142NO APICAL MERISTEM PROTEIN
1ut7_A3e-3611624817142NO APICAL MERISTEM PROTEIN
1ut7_B3e-3611624817142NO APICAL MERISTEM PROTEIN
3swm_A4e-3611624820145NAC domain-containing protein 19
3swm_B4e-3611624820145NAC domain-containing protein 19
3swm_C4e-3611624820145NAC domain-containing protein 19
3swm_D4e-3611624820145NAC domain-containing protein 19
3swp_A4e-3611624820145NAC domain-containing protein 19
3swp_B4e-3611624820145NAC domain-containing protein 19
3swp_C4e-3611624820145NAC domain-containing protein 19
3swp_D4e-3611624820145NAC domain-containing protein 19
4dul_A3e-3611624817142NAC domain-containing protein 19
4dul_B3e-3611624817142NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462370.11e-70NAC domain-containing protein 92
TrEMBLA0A1E5UYL68e-74A0A1E5UYL6_9POAL; NAC domain-containing protein 79
STRINGSb02g024530.14e-70(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2313956