PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00036.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 210aa    MW: 23297.2 Da    PI: 8.0024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00036.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-142376148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                                  rg W++eEde+l   ++ +G  tW+++a+         ++R++k+c++rw +yl
  Zmw_sc00036.1.g00090.1.am.mk 23 RGLWSPEEDERLFTQITCHGVSTWSSVAQLAViilhsgLRRSGKSCRLRWMNYL 76
                                  788*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1081880IPR017930Myb domain
SMARTSM007171.7E-82278IPR001005SANT/Myb domain
SuperFamilySSF466894.15E-2022115IPR009057Homeodomain-like
PfamPF002491.9E-112376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-182483IPR009057Homeodomain-like
CDDcd001671.13E-62676No hitNo description
PROSITE profilePS512949.4381123IPR017930Myb domain
SMARTSM007170.1481121IPR001005SANT/Myb domain
CDDcd001670.0048884116No hitNo description
Gene3DG3DSA:1.10.10.602.5E-1184123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MARKPNQHAA AGTGAAAEKK ERRGLWSPEE DERLFTQITC HGVSTWSSVA QLAVIILHSG  60
LRRSGKSCRL RWMNYLRPDL RKEPISEREE ETIISLQKSL GNRWGRTDKA IKNHWNSRIR  120
KRLNAAANAG QCRAGYSTAE GQAPAAGEKE EHTNNAAKAA APSPIPVYAC QLLDGGAQAF  180
HELDYVDDLL IDVPGHMEAW ESELFSLDIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-192312327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968332.12e-74transcription factor MYB57
SwissprotP200278e-36MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2T7DRN87e-76A0A2T7DRN8_9POAL; Uncharacterized protein
STRINGPavir.J24104.1.p8e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545