PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00044.1.g00540.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 291aa MW: 32341 Da PI: 11.8201

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00044.1.g00540.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.8	8.1e-30	128	177	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ Zmw_sc00044.1.g00540.1.am.mk 128 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFG 177 79**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-40	120	179	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.385	120	180	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.29E-38	122	178	No hit	No description
PRINTS	PR00404	1.7E-30	122	142	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	122	176	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-28	122	179	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-27	129	176	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-30	142	157	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-30	157	178	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MCSTSTRPDH ASPPPHAAAR PRHGGFRLRL RVIRSSSIIP CWPAPPAPRY RSAAPNLVHS 60 SFHASGRGST RKETRGEAAV WLRQPPPPAF LASSLCHFWE CSRVPLDSHF RERTRRSARM 120 VRGKTEMKRI ENATSRQVTF SKRRNGLLKK AFELSVLCDA EVALIVFSPR GKLYEFGSAA 180 RCVCRSIGSP PSLFTRPLLL SSRRVSHESA DCKSNSVSNS RFAAATSASN ARAFQATPSR 240 RPSGVRNTPK PSFDCCEAGM ESEWKRRAGR DQQLRGQTPM AATCEWRNIV L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-15	120	178	1	59	MEF2C
5f28_B	2e-15	120	178	1	59	MEF2C
5f28_C	2e-15	120	178	1	59	MEF2C
5f28_D	2e-15	120	178	1	59	MEF2C

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47773	2	3