PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00045.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 522aa MW: 57474.9 Da PI: 8.5714

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00045.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.9	1.3e-05	190	222	2	34
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 +++ C+ +++ + l+C+ ++ lC C H Zmw_sc00045.1.g00210.1.am.mk 190 QQWPCDYCGDAAAALHCRADEARLCVACDRLVH 222 7899****99**************98777 PP
2	CCT	64.4	3.4e-22	470	513	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eKrk+R+++K+irYesRK +A++R+RvKGrFvk++ Zmw_sc00045.1.g00210.1.am.mk 470 RDNAMQRYREKRKNRRYDKHIRYESRKLRADTRKRVKGRFVKST 513 899***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00021	2.40E-5	192	223	No hit	No description
Pfam	PF06203	1.5E-16	470	512	IPR010402	CCT domain
PROSITE profile	PS51017	15.299	470	512	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MRPHEKVHRS SDNDATMIIL QGEVDTGKSS LATRARRSRR HVSLALFFSS HELWYCLPAW 60 CRLQRLFPEL FVASGQQEGL HTASPFQITV WARSTCWTLT TKPYVDDGPR CQRPARQLGK 120 SREIFSDTRA PAAPPPHHPR QRHVFRGCVR GSAPRRGSEA LPSLPPSCLM HCAARRREPS 180 LLSSVPFWQQ QWPCDYCGDA AAALHCRADE ARLCVACDRL VHAXXXXPVE GFSGCPSAAE 240 LAASWGLDLR GAAGYDDAED DAFFSALDYS MLAAVDPDLR DLYVPCDLPD VAASSVVAGR 300 RLKGEALCHQ LAEMARREVA AHSDLSPRTP RRSSAASRGR LPDKHAPPTL HPPPGPQEVP 360 LPYTSLLMMA STNCPELIGG GDRMAGDDEQ LLWDCAAPSV PPAQVSTGCN RRKVNSCTST 420 IDGPTTSGNH VPTSGPALTW ESSFGDQTVA PAGVERPAMK IDSETLAQNR DNAMQRYREK 480 RKNRRYDKHI RYESRKLRAD TRKRVKGRFV KSTEALDVGN GG

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MRPHEKVHRS SDNDATMIIL QGEVDTGKSS LATRARRSRR HVSLALFFSS HELWYCLPAW  60
CRLQRLFPEL FVASGQQEGL HTASPFQITV WARSTCWTLT TKPYVDDGPR CQRPARQLGK  120
SREIFSDTRA PAAPPPHHPR QRHVFRGCVR GSAPRRGSEA LPSLPPSCLM HCAARRREPS  180
LLSSVPFWQQ QWPCDYCGDA AAALHCRADE ARLCVACDRL VHAXXXXPVE GFSGCPSAAE  240
LAASWGLDLR GAAGYDDAED DAFFSALDYS MLAAVDPDLR DLYVPCDLPD VAASSVVAGR  300
RLKGEALCHQ LAEMARREVA AHSDLSPRTP RRSSAASRGR LPDKHAPPTL HPPPGPQEVP  360
LPYTSLLMMA STNCPELIGG GDRMAGDDEQ LLWDCAAPSV PPAQVSTGCN RRKVNSCTST  420
IDGPTTSGNH VPTSGPALTW ESSFGDQTVA PAGVERPAMK IDSETLAQNR DNAMQRYREK  480
RKNRRYDKHI RYESRKLRAD TRKRVKGRFV KSTEALDVGN GG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444681.1	1e-82	zinc finger protein CONSTANS-LIKE 15
TrEMBL	A0A3Q8BS39	6e-84	A0A3Q8BS39_9POAL; COLO-1
STRING	Pavir.Fa00145.1.p	1e-149	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4504	20	26