PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00050.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 427aa MW: 44975.6 Da PI: 6.7144

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00050.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	66.7	4.7e-21	154	286	2	123
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......ss 75 ++lL cA av++g+l+++q+l l elas +gd+++Rlaa+ ++AL +rl ++++a +++ + + Zmw_sc00050.1.g00280.1.am.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRALLRRLPAA-VGVAAAATVRVPPCVCpmpafvaAE 233 689***********************************************983.3333333333222222333443333 PP GRAS 76 eelaalkl....fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGl 123 ++l+ + f+evsP++ + + +aN aI +a+++ + +H++D+++s+G+ Zmw_sc00050.1.g00280.1.am.mk 234 QRLFR--AslikFHEVSPWFALPNALANAAIAQAAARGvepRPIHVVDLGVSHGV 286 33333..25589******************998778899********97 PP
2	GRAS	65	1.6e-20	286	422	231	374
GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhe 310 v++l+P++vv++e +a ++++ + +f+ le+ + +++s++a + ++ +er+ +E+e g ++ va eg+e Zmw_sc00050.1.g00280.1.am.mk 286 VRGLNPELVVLSELDAV-GDGTVAGEFAARLEMLWRFLESTSAAFKGKDgDERRLLEAE-AGTSVAAGVAGEGRE------ 358 899*******99975.6999***************888877776999999999.9*******998...... PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374 Wr+r+ +aGF++++++++a+++ak+llrk++ +++++ ++ g++ l Wk++p+ ++S Wr Zmw_sc00050.1.g00280.1.am.mk 359 ---AWRDRMAAAGFEAAAFDDEAVESAKSLLRKYDgGWEMSAPaaSSAGAVALRWKGQPVSFCSLWR 422 ...9***************************55554443546678888************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.684	127	427	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-18	154	286	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MHASSCKLVY MKAMNCREQE QQELAATTSN NGLDWLDDSI SFLTADIDFG GWWDTTPAEA 60 QQDDISSVVA QTLSPPAPLA TTSSPLAQAS SSTASPAVSS PSEPSSKKRK SPVHRASGQG 120 GSNQRRRAEQ DRAGGKKGGA KGGAGSDRDM RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG 180 ELASFSGDAN HRLAAHGLRA LLRRLPAAVG VAAAATVRVP PCVCPMPAFV AAEQRLFRAS 240 LIKFHEVSPW FALPNALANA AIAQAAARGV EPRPIHVVDL GVSHGVRGLN PELVVLSELD 300 AVGDGTVAGE FAARLEMLWR FLESTSAAFK GKDGDERRLL EAEAGTSVAA GVAGEGREAW 360 RDRMAAAGFE AAAFDDEAVE SAKSLLRKYD GGWEMSAPAA SSAGAVALRW KGQPVSFCSL 420 WRSACNV

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MHASSCKLVY MKAMNCREQE QQELAATTSN NGLDWLDDSI SFLTADIDFG GWWDTTPAEA  60
QQDDISSVVA QTLSPPAPLA TTSSPLAQAS SSTASPAVSS PSEPSSKKRK SPVHRASGQG  120
GSNQRRRAEQ DRAGGKKGGA KGGAGSDRDM RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG  180
ELASFSGDAN HRLAAHGLRA LLRRLPAAVG VAAAATVRVP PCVCPMPAFV AAEQRLFRAS  240
LIKFHEVSPW FALPNALANA AIAQAAARGV EPRPIHVVDL GVSHGVRGLN PELVVLSELD  300
AVGDGTVAGE FAARLEMLWR FLESTSAAFK GKDGDERRLL EAEAGTSVAA GVAGEGREAW  360
RDRMAAAGFE AAAFDDEAVE SAKSLLRKYD GGWEMSAPAA SSAGAVALRW KGQPVSFCSL  420
WRSACNV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318969.1	1e-121	nodulation-signaling pathway 1 protein
TrEMBL	A0A1E5VYC7	1e-122	A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRING	GRMZM2G359304_P01	1e-107	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6135	28	54