PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00050.1.g00390.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 219aa MW: 23184.5 Da PI: 6.5125

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00050.1.g00390.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	184.5	8.3e-58	22	117	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv+p Zmw_sc00050.1.g00390.1.sm.mk 22 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDP 102 89***************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 lk yl+k+re+ege+ Zmw_sc00050.1.g00390.1.sm.mk 103 LKHYLHKFREIEGER 117 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.5E-55	19	121	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-40	24	132	IPR009072	Histone-fold
Pfam	PF00808	7.0E-28	27	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.6E-20	55	73	No hit	No description
PROSITE pattern	PS00685	0	58	74	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.6E-20	74	92	No hit	No description
PRINTS	PR00615	5.6E-20	93	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPESDNDSGG PSNAGGDLSS SREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS 60 EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYV DPLKHYLHKF REIEGERAAA 120 SSGGGSTAAP QQQQSDMSRN VNAGGVAYGG YGGPGAGGMM MMMGQPPMYG GSPQQQQQQQ 180 QQQQHQLQHH MATGGGGGYG HLGGGSSSAS SGLGRQDRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-48	20	112	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631006.1	1e-84	nuclear transcription factor Y subunit B-8
Swissprot	Q75IZ7	8e-86	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0E0NWH3	3e-84	A0A0E0NWH3_ORYRU; Uncharacterized protein
TrEMBL	A0A287XNK1	4e-84	A0A287XNK1_HORVV; Uncharacterized protein
TrEMBL	F2DAQ6	3e-84	F2DAQ6_HORVV; Predicted protein
STRING	MLOC_5897.1	4e-85	(Hordeum vulgare)
STRING	ORUFI03G21970.1	4e-85	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]