PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00059.1.g00410.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 498aa    MW: 54988.7 Da    PI: 4.6972
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00059.1.g00410.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35751672103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+++ +++l+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Zmw_sc00059.1.g00410.1.sm.mk  75 FLSKTYDLVTEPALDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFA 146
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+ F +++k+ll++i r++s+
  Zmw_sc00059.1.g00410.1.sm.mk 147 HEDFLRDNKHLLKRIVRRRSS 167
                                   *****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5571164IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3771164IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-3471164IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-167598IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3175164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-16113125IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340114138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-16126138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNPDRARSDA PDVPYPDASA SMEALLVPKL EAEAALPLSL PGPFVPLDQV MPAEPVPDPP  60
RPLEALLQGP QLPPFLSKTY DLVTEPALDG VISWGAAGNS FVVWDPSTFA RDVLPHHFKH  120
NNFSSFVRQL NTYGFRKVHA DRWEFAHEDF LRDNKHLLKR IVRRRSSPTQ QSSIQPASSS  180
GDSSLDPELH TLRREKIALL QEVARLKQEQ SQTIEHMSTL NKRLDTAEDR QKQMISFLAK  240
LLQNPAFVRQ LKLHREQKEI DSCRMKRKFL KHVPHGSIES GESSSLHTGE GGSHFPASSH  300
MAVQDDIADL QNFLLGDDDF NFGMNAENIG LEGVEEPEDI GALVQGFNAQ DVLGSGAELL  360
EMPTSSAPLG QDPTIGRHKG KNVLCPGLDA TSSEADCLGS LSENMGVLSG TMLETAPDDE  420
PMWSMDTSAA LQSSCSGSSQ QPYSSLASDP YLMEIANKPE KFWDLDFQPL DEGDLQLDKC  480
AIDDPTLQQQ QQRNLKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-246716711123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX90.0A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGPavir.Ab01320.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]