PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00059.1.g00720.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 225aa    MW: 23978.1 Da    PI: 4.2258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00059.1.g00720.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-191263156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  s y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g+
  Zmw_sc00059.1.g00720.1.sm.mk 12 SSYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 63
                                  5799******.**********754...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-281271No hitNo description
SuperFamilySSF541711.7E-211270IPR016177DNA-binding domain
PfamPF008474.2E-111362IPR001471AP2/ERF domain
PROSITE profilePS5103221.0741370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-291370IPR001471AP2/ERF domain
SMARTSM003801.8E-321376IPR001471AP2/ERF domain
PRINTSPR003671.0E-81425IPR001471AP2/ERF domain
PRINTSPR003671.0E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQPPHAAAAT ASSYLGVRRR PWGRYAAEIR DPVTKERHWL GTFDTAEEAA IAYDRAARNI  60
RGASARTNFA YPDLPPGSSV TPYLSPDISA DQLQQYYANP VPVAQQPTPA ADQLAGHGSA  120
GCEAYSSSYH VPEAMSSYGA DDSMAYAGNA QMDMMYDGGA GAGAGMAWCD ASELEFGGYS  180
DDNANASHGM YFEEGYVHSP LFSPMPAADE VDGFQLGGSS SSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17269371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.11e-105ethylene-responsive transcription factor LEP-like
TrEMBLA0A1E5VG731e-112A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP
STRINGGRMZM2G047999_P011e-102(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397