PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00059.1.g00880.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 210aa MW: 23282.4 Da PI: 5.0705

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00059.1.g00880.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.7	1.3e-12	48	90	40	85
trihelix 40 ergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 ++g+er+++qC+++w+nl+++ykki+++e+ ++ + p f + Zmw_sc00059.1.g00880.1.am.mk 48 RHGVERGAVQCRKRWSNLAGDYKKIRDWERAAAAAR---EPSFWAM 90 89****************************974433...4777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSDAGDPAGA AAAAATTSSG RAPRLPRWTR QEILVLIEGK RMVESRGRHG VERGAVQCRK 60 RWSNLAGDYK KIRDWERAAA AAREPSFWAM RNDARRERRL PGFFDREVYD ILEGRGRAIL 120 GGRSGGNAAE EEVVVPVEEE EEEEEEEEAT TAAAPPPAHP VIALPISGEL VVDLFKCHLL 180 VLEFVLFVID KVFFAVHCFP RIAVFDDSIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008677637.1	1e-60	uncharacterized protein LOC100383806 isoform X2
Refseq	XP_021316288.1	4e-60	trihelix transcription factor ASR3
Swissprot	Q8VZ20	3e-38	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A194YPY4	1e-58	A0A194YPY4_SORBI; Uncharacterized protein
STRING	GRMZM2G162840_P01	3e-59	(Zea mays)

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]