PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00060.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 638aa MW: 68184.6 Da PI: 6.611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00060.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.1e-16	390	436	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Zmw_sc00060.1.g00260.1.sm.mkhc 390 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 436 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.85E-17	383	440	No hit	No description
SuperFamily	SSF47459	1.96E-20	384	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.981	386	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-13	390	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-20	390	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-17	392	441	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MVYSADACVC PPVHGCRSDG NDFAELLWEN GQAVVHGRRK QPLTAFPPFT CGGASSSKAQ 60 EKHPGSDPVA LLKTTGVYGA GTMAPSAHDL YSGLDTSRGN GDLDDTVPWI HYPIIEDDDE 120 GAAPALADSY SPDFFSELQA AAAVAVNLTP PPPSVQHTAD NRSAGAATMA GEPEPSKESR 180 RISVSAPRPE PQAEFKANKQ PRLGGGGDAL MNFSLFSRPA AMARASLQQS AQRPPPPLGT 240 DKPPGVTVTS STRVESTVVQ SSSGPRTAPV HTDQRMAWPQ AKEVRFACTA APTSMAAGIM 300 QQELPRDRIA NDMAPQRRVE AKKVPEAAIA ASSVCSGNGA GIGNDESWRQ QKRKSQAECS 360 ASQDDDLEDE SGGLRRSGSR STKRSRTAEV HNLSERRRRD RINEKMRALQ ELIPNCNKID 420 KASMLDEAIE YLKTLQLQVQ MMSMGSGLCI PPMLLPPTMQ HLQIPTMAHF PHLGMGLGYG 480 MGIFDMNSTT TVPLPPMPGA HFPCQMIPGT APHAIGIPGR NTLPMFGVPG QPIHPLVPGV 540 RPFPSLASLP VRPNLAPQVS ATVAYMVQEQ QQVSNQQQQS LNDEGTQGAS TRDPQIQTVL 600 QVDNQHFSVP SSTQSESSHF LDSGGDKTNT AVRNGVET

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MVYSADACVC PPVHGCRSDG NDFAELLWEN GQAVVHGRRK QPLTAFPPFT CGGASSSKAQ  60
EKHPGSDPVA LLKTTGVYGA GTMAPSAHDL YSGLDTSRGN GDLDDTVPWI HYPIIEDDDE  120
GAAPALADSY SPDFFSELQA AAAVAVNLTP PPPSVQHTAD NRSAGAATMA GEPEPSKESR  180
RISVSAPRPE PQAEFKANKQ PRLGGGGDAL MNFSLFSRPA AMARASLQQS AQRPPPPLGT  240
DKPPGVTVTS STRVESTVVQ SSSGPRTAPV HTDQRMAWPQ AKEVRFACTA APTSMAAGIM  300
QQELPRDRIA NDMAPQRRVE AKKVPEAAIA ASSVCSGNGA GIGNDESWRQ QKRKSQAECS  360
ASQDDDLEDE SGGLRRSGSR STKRSRTAEV HNLSERRRRD RINEKMRALQ ELIPNCNKID  420
KASMLDEAIE YLKTLQLQVQ MMSMGSGLCI PPMLLPPTMQ HLQIPTMAHF PHLGMGLGYG  480
MGIFDMNSTT TVPLPPMPGA HFPCQMIPGT APHAIGIPGR NTLPMFGVPG QPIHPLVPGV  540
RPFPSLASLP VRPNLAPQVS ATVAYMVQEQ QQVSNQQQQS LNDEGTQGAS TRDPQIQTVL  600
QVDNQHFSVP SSTQSESSHF LDSGGDKTNT AVRNGVET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	394	399	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967640.1	0.0	transcription factor APG isoform X1
Refseq	XP_004967641.1	0.0	transcription factor APG isoform X1
Refseq	XP_004967642.1	0.0	transcription factor APG isoform X1
Refseq	XP_004967643.1	0.0	transcription factor APG isoform X1
Refseq	XP_004967644.1	0.0	transcription factor APG isoform X1
Refseq	XP_022682497.1	0.0	transcription factor APG isoform X1
Swissprot	Q0JNI9	0.0	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A3L6R267	0.0	A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRING	Si000700m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]