PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00062.1.g00470.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 208aa MW: 23061.9 Da PI: 7.093

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00062.1.g00470.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.3e-19	115	167	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k Zmw_sc00062.1.g00470.1.am.mk 115 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 167 44799***********************************************9 PP
2	HD-ZIP_I/II	128.3	3.1e-41	113	203	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 e+krrls eqv++LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L Zmw_sc00062.1.g00470.1.am.mk 113 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALL 193 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreel 91 +++++L++e+ Zmw_sc00062.1.g00470.1.am.mk 194 AQNKKLHAEV 203 ****9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-20	90	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-19	106	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	109	169	IPR001356	Homeobox domain
SMART	SM00389	2.5E-18	112	173	IPR001356	Homeobox domain
CDD	cd00086	1.32E-15	114	170	No hit	No description
Pfam	PF00046	3.5E-16	115	167	IPR001356	Homeobox domain
PRINTS	PR00031	2.2E-6	140	149	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.2E-6	149	165	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.8E-10	169	203	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MATNGMAPSF FPANFLLQMQ QPLPHHHHLH PQQQAADHPH HHDHEHHLLA PPPPSLSPFL 60 HDFAGAMAPP PPMYPPDAVS DDLHAAEPQQ GGGAASDDEE GSAAAGGCGG AGERKRRLSV 120 EQVRTLERSF EVANKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDALRR 180 QLDAARAEND ALLAQNKKLH AEVLFFVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	117	ERKRRL
2	161	169	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467274.1	1e-84	homeobox-leucine zipper protein HOX23
Swissprot	A2Z734	3e-58	HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
Swissprot	Q94GL5	3e-58	HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBL	A0A0A9NZZ8	5e-94	A0A0A9NZZ8_ARUDO; Uncharacterized protein
TrEMBL	A0A1E5V6C7	9e-93	A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRING	Pavir.Ia02126.1.p	9e-93	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]