PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00068.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 321aa MW: 35273.8 Da PI: 5.4672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00068.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	81	126	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++Er RR+++N+++ eLr+++P+ +K++Ka+i + A+eYI +Lq Zmw_sc00068.1.g00270.1.sm.mkhc 81 NIIMERDRRRKLNEKLYELRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 126 5689*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.139	76	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-17	80	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.92E-14	80	130	No hit	No description
Pfam	PF00010	2.4E-11	81	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-16	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-15	82	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.0096	205	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDAAEMGDSF ENYWETQRFF DCEEFMSSIY PGSGGAGEDT MSYYDSSSPD GSHSSSAAPA 60 EFGHKAQSAG GGGGVAGANK NIIMERDRRR KLNEKLYELR SVVPNITKMD KASIIKDAIE 120 YIEQLQAEER QTLQEVRAPE SAAPGHGNVG TYNYEHDEGV LLPTERRKRT KRAQSAPSLP 180 APSAAPSPPV EVLELRVSEV GDRVLVVSVT CRKRRDAMAR VCRAIEELRL RVITANITSV 240 AGCLVHTVFV EVDHTDRIQM KQMIEAAYTY DLPGSDDKII ILIISCMTVI NRHSSPWGKI 300 QLAPDILARN SQALSQIVGG E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975236.1	1e-104	transcription factor bHLH35
TrEMBL	A0A1E5V009	1e-107	A0A1E5V009_9POAL; Transcription factor bHLH35
STRING	Si010812m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133