PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00075.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 164aa MW: 18519.5 Da PI: 8.7805

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00075.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.6e-12	48	71	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ Zmw_sc00075.1.g00030.1.sm.mkhc 48 EPDCSYYMRTGLCRFGMTCKFNHP 71 789********************9 PP
2	zf-CCCH	41.1	3e-13	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Zmw_sc00075.1.g00030.1.sm.mkhc 93 QPECQYYLKTGTCKFGATCKFHHPR 117 589********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.366	45	73	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-5	45	72	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-9	48	71	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	50	73	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	51	71	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.939	90	118	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-6	90	117	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-7	92	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-10	94	117	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-5	96	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.155	136	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	29	136	160	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	2.8	150	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MVVVLEVTTG RTPVNVTLLP GTKVAEAMWQ MNLGEAAESG PYPERVGEPD CSYYMRTGLC 60 RFGMTCKFNH PLDRKLAVAA ARMKGEYPQR TSQPECQYYL KTGTCKFGAT CKFHHPREKA 120 GMANRVQWNS LGYPLRPNEK ECAYYIRTGQ CKFGMTCSDW LVVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979251.1	3e-86	zinc finger CCCH domain-containing protein 63 isoform X1
Refseq	XP_012703997.1	3e-86	zinc finger CCCH domain-containing protein 63 isoform X2
Swissprot	Q2R4J4	1e-86	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A368S8D7	3e-86	A0A368S8D7_SETIT; Uncharacterized protein
STRING	ORGLA11G0112800.1	1e-86	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]