PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00077.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 407aa    MW: 44056.5 Da    PI: 6.414
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00077.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.5e-11108149147
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                                     s+y+GV++++++grW+++I+d      + k+++lg   +  +A + ai
  Zmw_sc00077.1.g00070.1.sm.mkhc 108 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGELAFLVDAFADAI 149
                                     78*******************......55*******999888876665 PP
2AP238.72.4e-12219269155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ +++g
  Zmw_sc00077.1.g00070.1.sm.mkhc 219 SKYCGVTLHK-CGRWEAR---M---GqllGTKYIYLGLFDTEIEAARAYDRAAIRFNG 269
                                     7999******.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-12109184IPR001471AP2/ERF domain
SMARTSM003803.1E-23109190IPR001471AP2/ERF domain
PROSITE profilePS5103215.804109184IPR001471AP2/ERF domain
CDDcd000189.72E-20109184No hitNo description
SuperFamilySSF541719.81E-8152185IPR016177DNA-binding domain
CDDcd000183.22E-22219279No hitNo description
SuperFamilySSF541711.24E-15219278IPR016177DNA-binding domain
PfamPF008476.4E-8219269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-14220277IPR001471AP2/ERF domain
SMARTSM003806.8E-28220283IPR001471AP2/ERF domain
PROSITE profilePS5103215220277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVLDLNAESP GDGGEAASPA SSSADAGGGF FRFDLLGGSP DGEGFSSPPV VTRQLFPSPH  60
PGVVVLDGSP PPSTEMVTGP WTRGVAAVPA PVPSPGKKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQIYLGELAF LVDAFADAIF ALLLGGFDTA HEAARAYDRA AIKFRGLDAD  180
INFDLKDYED DLKQMRNWTK EEFVHILRRQ STGFARGSSK YCGVTLHKCG RWEARMGQLL  240
GTKYIYLGLF DTEIEAARAY DRAAIRFNGK DSVTNFDPSS YDGDVPPEIE KDVADRDILD  300
LSLRISQPNL HDPRGSGILS GLRSAGESPE ASTVVFPKEA TARMEEKRPE LVGAPPFPPW  360
AWQMQGSPAP PLPAPAASSG FSTTTGAGMQ YTGLRLFAVG HRFPPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804503.11e-149floral homeotic protein APETALA 2-like isoform X2
SwissprotQ8H4431e-141AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A3L6QPQ61e-150A0A3L6QPQ6_PANMI; AP2-EREBP transcription factor
STRINGSi029636m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]