PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00078.1.g00350.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 543aa MW: 59357.2 Da PI: 10.7132

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00078.1.g00350.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	88.5	8.4e-28	229	326	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsf 80 ++ r+ws eDe+++L++li f+ k+g + +d+ ++ +++ +++ +k+s++ql++KirrLK+K+k +ak+g+ep++ Zmw_sc00078.1.g00350.1.am.mk 229 RPPRVWSPEDEVTILRALIAFQGKKGRlpASIQDTAKLESQIGGQLIAKASTTQLSDKIRRLKHKYKLLAIRAKKGREPDL 309 578**********************777888******************************************** PP DUF573 81 skehdqkifelskkiWg 97 +h+++++elskk+Wg Zmw_sc00078.1.g00350.1.am.mk 310 PMDHEREVYELSKKVWG 326 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.0E-26	231	326	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MAPKRPATGA AAAASGSASN ASDAEGDAGH QRRRRHSPSP ARTRSRSRSK TPPTNLRPNA 60 AALSATPIST GADYAAASDS DADGRDQSPR RRRERYPTPR SYSDADAAGR VPSPRRDRQR 120 SPRLYSDSDS DADAAAGGRI SSLRRSRDRS PRLHSEPDNS GATEGGGEGN VSPLPRARRS 180 TRIETSNIKP LSSRLMDEQR RSAGAASSQR RSKRRLRSPA LPSAEHNKRP PRVWSPEDEV 240 TILRALIAFQ GKKGRLPASI QDTAKLESQI GGQLIAKAST TQLSDKIRRL KHKYKLLAIR 300 AKKGREPDLP MDHEREVYEL SKKVWGAIGT DGFTEVGGSL TYENAGDEES NEEQEIEESD 360 EGMDSGWDVR DRPKKLKAFS ENGSMNAIAG NGNVFATGCR SKASQGGGGG KDYPGKGQQM 420 YPYLWEAVEE LSKNHPSGQI FRKAFGVLEK AKARVMEEKL RKFRMSEIRQ QLRRMDLMKE 480 TVTMVLDALE GTAAQAGLFH EPQGCLRAAS RSRLAFQAFF PVTKPPLPSS PAPAPWHRDT 540 AAC

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MAPKRPATGA AAAASGSASN ASDAEGDAGH QRRRRHSPSP ARTRSRSRSK TPPTNLRPNA  60
AALSATPIST GADYAAASDS DADGRDQSPR RRRERYPTPR SYSDADAAGR VPSPRRDRQR  120
SPRLYSDSDS DADAAAGGRI SSLRRSRDRS PRLHSEPDNS GATEGGGEGN VSPLPRARRS  180
TRIETSNIKP LSSRLMDEQR RSAGAASSQR RSKRRLRSPA LPSAEHNKRP PRVWSPEDEV  240
TILRALIAFQ GKKGRLPASI QDTAKLESQI GGQLIAKAST TQLSDKIRRL KHKYKLLAIR  300
AKKGREPDLP MDHEREVYEL SKKVWGAIGT DGFTEVGGSL TYENAGDEES NEEQEIEESD  360
EGMDSGWDVR DRPKKLKAFS ENGSMNAIAG NGNVFATGCR SKASQGGGGG KDYPGKGQQM  420
YPYLWEAVEE LSKNHPSGQI FRKAFGVLEK AKARVMEEKL RKFRMSEIRQ QLRRMDLMKE  480
TVTMVLDALE GTAAQAGLFH EPQGCLRAAS RSRLAFQAFF PVTKPPLPSS PAPAPWHRDT  540
AAC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821022.1	1e-168	serine/arginine repetitive matrix protein 1-like
TrEMBL	A0A0A9BR30	0.0	A0A0A9BR30_ARUDO; Uncharacterized protein
STRING	Si013598m	1e-164	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87