PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00078.1.g00360.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 439aa    MW: 46662.4 Da    PI: 8.7163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00078.1.g00360.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-065981123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++Cg+ F r  nL+ H r+H
  Zmw_sc00078.1.g00360.1.am.mk 59 YVCEICGQGFQRDQNLQMHRRRH 81
                                  9*********************9 PP
2zf-C2H211.80.00073138159223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    C  C+k +  +s++k H++t+
  Zmw_sc00078.1.g00360.1.am.mk 138 ACARCSKAYAVHSDYKAHLKTC 159
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-55881No hitNo description
PROSITE profilePS5015711.6355981IPR007087Zinc finger, C2H2
SMARTSM003550.00325981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355110101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-4128158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-5132157No hitNo description
SMARTSM00355230137164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPHQEPAVTG TPEPFRSLQI ATASAAAGAK RKRRPAGTPD PDAEVVSLSP RTLLESDRYV  60
CEICGQGFQR DQNLQMHRRR HKVPWKLLKR DAGEGARKRV FVCPEPSCLH HDPAHALGDL  120
VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR VFSRYGAVRP  180
HHLYELSSAT PSLYFGIHPP EERETTTRGK GREGTGTISE GSCIRLYSIS RLRLALAAAP  240
FNGVNQPDGL KTDAPACLTW IAKSLIASLF SSLADIKSRI VVSDRPAAWK AGSPNPSAIA  300
LHCLLPTEEV ISADISSTPT HASLVESFIE HQDTCNSSRP ARADAASSSP ASGGGGGGRL  360
GAAAVAASSS PQAPQGRQVH VALSRTASSA SPAAAVSSEV ASYVSSVVTE GGDADVDNDD  420
DLRLVNADDV PGRGGMDIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-13133184354Zinc finger protein JACKDAW
5b3h_F2e-13133184354Zinc finger protein JACKDAW
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124