PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00081.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 540aa MW: 58169.5 Da PI: 5.5899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00081.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.7e-13	318	363	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr++lP++ K +K ++L A Y+k+L+ Zmw_sc00081.1.g00260.1.am.mk 318 HMMSERKRREKLNDSFQTLRSILPPC-----SKKDKTTVLINAASYLKKLE 363 7899*******************9.....699************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	310	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.919	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.60E-11	318	361	No hit	No description
Pfam	PF00010	2.5E-10	318	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-16	318	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-12	319	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MKISCAVLPW RSHHGIGAVQ TGGVFPSRCA QERTGPWPLI RPDRSIRGAS SPRVASHHMP 60 PIATFDRSDF HDGFAFLAEL APPLALRPLS LLLWCGLDLQ LPSANDVPGL RGAADDDPFW 120 PALADCAASF LAVDDIDITG PPSDKVVGGM VMDMDASCFM PEEQHERTYS SSPPSSKRSL 180 SMDDSAGTIS SPFSFALDGP DASLADAGVF DPFAGDDAAI MRAMMAVLSS ASPSSSESSS 240 PPQSQETISS IQQAAAVYPY GENNNNNNYY NGHVAVGSIT SLAVAPEQAT SLTNSLGGGR 300 QEQERVAANN NNSSQVYHMM SERKRREKLN DSFQTLRSIL PPCSKKDKTT VLINAASYLK 360 KLESEISELE EKNAKLERHV PRDDGGAAAS VAAQRRAKIQ ISRAPSDADQ MNLTVMMMVE 420 CDIVDLVLHV LERLRWMAGV SVLSVDADTY SRQVLLKAIA SIKLQITVRA LLALHYVAAN 480 SYKWHFEQSK RLDISVLRDL MQDGDAWNEA SFHEAMKKVV HDATSSAGAG ASAAPQVASA

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MKISCAVLPW RSHHGIGAVQ TGGVFPSRCA QERTGPWPLI RPDRSIRGAS SPRVASHHMP  60
PIATFDRSDF HDGFAFLAEL APPLALRPLS LLLWCGLDLQ LPSANDVPGL RGAADDDPFW  120
PALADCAASF LAVDDIDITG PPSDKVVGGM VMDMDASCFM PEEQHERTYS SSPPSSKRSL  180
SMDDSAGTIS SPFSFALDGP DASLADAGVF DPFAGDDAAI MRAMMAVLSS ASPSSSESSS  240
PPQSQETISS IQQAAAVYPY GENNNNNNYY NGHVAVGSIT SLAVAPEQAT SLTNSLGGGR  300
QEQERVAANN NNSSQVYHMM SERKRREKLN DSFQTLRSIL PPCSKKDKTT VLINAASYLK  360
KLESEISELE EKNAKLERHV PRDDGGAAAS VAAQRRAKIQ ISRAPSDADQ MNLTVMMMVE  420
CDIVDLVLHV LERLRWMAGV SVLSVDADTY SRQVLLKAIA SIKLQITVRA LLALHYVAAN  480
SYKWHFEQSK RLDISVLRDL MQDGDAWNEA SFHEAMKKVV HDATSSAGAG ASAAPQVASA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	326	ERKRRE
2	322	327	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969032.1	1e-114	putative transcription factor bHLH041
TrEMBL	A0A0A9RPB9	1e-115	A0A0A9RPB9_ARUDO; Uncharacterized protein
STRING	Si001494m	1e-114	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10174	31	36