PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00088.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 249aa MW: 27436.6 Da PI: 7.4979

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00088.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.8	7.4e-13	35	59	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Zmw_sc00088.1.g00100.1.am.mkhc 35 QPECQYYLKTGICKFGATCKFHHPR 59 799********************96 PP
2	zf-CCCH	37.1	5.3e-12	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Zmw_sc00088.1.g00100.1.am.mkhc 143 DQPECQFYMKTGDCKFGAGCKFHHPK 168 689*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.8E-6	32	59	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.943	32	60	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-7	35	61	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-10	35	59	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-5	38	60	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4E-4	141	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.197	141	169	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-9	143	168	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	145	169	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-5	147	168	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MWQMDLGEAS ESVLYPERAV AVARMKGEYP QRVGQPECQY YLKTGICKFG ATCKFHHPRE 60 KAAMANRVQW NSLGYPLRPA QIGLSSSDDQ QRTSGGAQYY TGSQQSETTA MGDQGMFSSY 120 QAGSVPVGLY AVPRENVFPD RPDQPECQFY MKTGDCKFGA GCKFHHPKDR TVPPPNCELS 180 PIGLPLRPVM YGHVSSPTSE APTTRHMLAQ VPSHSEVSPD SGSGRSQRIT HSDSQQTQPG 240 ERSTEREAS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703997.1	1e-103	zinc finger CCCH domain-containing protein 63 isoform X2
Swissprot	Q2R4J4	2e-82	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0D9Z6U4	1e-122	A0A0D9Z6U4_9ORYZ; Uncharacterized protein
STRING	Si026440m	1e-102	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]