PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00091.1.g00320.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 215aa    MW: 23675.7 Da    PI: 10.0839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00091.1.g00320.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.7e-263390458
                                  SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY  4 gynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                                  g++WrKYGqKe+ g+++pr+YYrCt++   +Cp++k+v+r+++dp v++++Y+geH+ 
  Zmw_sc00091.1.g00320.1.sm.mk 33 GHSWRKYGQKEILGARHPRAYYRCTHRqlaRCPATKQVQRTDSDPAVFDVVYHGEHTR 90
                                  799***********************99999*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.1983393IPR003657WRKY domain
SMARTSM007741.2E-303392IPR003657WRKY domain
SuperFamilySSF1182905.49E-223390IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-243390IPR003657WRKY domain
PfamPF031061.8E-243389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKRKATARWS GQVRVSCSAG AAKGPRRRRP VVGHSWRKYG QKEILGARHP RAYYRCTHRQ  60
LARCPATKQV QRTDSDPAVF DVVYHGEHTR RPAVPGARKT PQHNAHAEGL VARLTVATTD  120
AAVLPMTPES YPPRGAPSPW SLASPVGSDS NTVYPCPVNW PLDGDLQEVV SAFAVRSGGA  180
HQTALDTEIM RPEYLGNFDY QSFDIGALET MQSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-1933911169OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820899.15e-62probable WRKY transcription factor 41
TrEMBLA0A2T7D6U33e-63A0A2T7D6U3_9POAL; Uncharacterized protein
STRINGPavir.Fa01520.1.p8e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131