PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00093.1.g00300.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 317aa    MW: 35173.2 Da    PI: 4.6549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00093.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.21.1e-25105165259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqKe+++s+fpr Y+rCt++   gC ++++v++s+ dp+v  itY geH+++
  Zmw_sc00093.1.g00300.1.am.mk 105 EDDHAWRKYGQKEIRDSKFPRLYFRCTYKedqGCLARRRVQQSDADPSVYLITYFGEHTCS 165
                                   8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.34699167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-2499165IPR003657WRKY domain
SuperFamilySSF1182906.15E-24100166IPR003657WRKY domain
SMARTSM007746.8E-37104166IPR003657WRKY domain
PfamPF031064.6E-24105164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAMATKPASA ASELIAKGRD STAVLQAILG QQPAAVAEMP DGIWELTEQI IRCCDRALAA  60
LQEGAAGGAK KREPEEHVMD APRSKRMRVS DGERGITVEK KWTMEDDHAW RKYGQKEIRD  120
SKFPRLYFRC TYKEDQGCLA RRRVQQSDAD PSVYLITYFG EHTCSCSRDT DEPPASLVIN  180
FGSGRTRDGQ LPSGCSPWPS CDDDGLVVSE TSSEICGLSE GDDLRPDKDN VAEQREHSTP  240
VPPPKPEGMS LPEWEPLDGF LDWELWDDKI SFDFGEYITT AAQTSYSNAR FGGALGGRWE  300
HAELGQRRSA PRLVTEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22104164868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.13e-81probable WRKY transcription factor 70
TrEMBLA0A2T7ECG04e-83A0A2T7ECG0_9POAL; Uncharacterized protein
STRINGPavir.J07662.1.p1e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667