PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00093.1.g00560.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 401aa    MW: 43615.8 Da    PI: 6.2704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00093.1.g00560.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-16228276355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr++  +g+WvAeIr+p   + r +r++lg+f+ a +Aa a+++a+ +++g
  Zmw_sc00093.1.g00560.1.am.mk 228 FSGVRQRQ-WGKWVAEIREP---N-RgRRYWLGTFDNAVDAALAYDRAAVCIYG 276
                                   78***999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.363227286IPR001471AP2/ERF domain
CDDcd000181.23E-24227286No hitNo description
SMARTSM003804.1E-29227292IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-18228287IPR016177DNA-binding domain
PRINTSPR003676.9E-7228239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-26228287IPR001471AP2/ERF domain
PfamPF008478.5E-10228276IPR001471AP2/ERF domain
PRINTSPR003676.9E-7250266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAHLPLLTWV VPARRAQKQD PPAAGPRGGW LGQGGHWPWP IGRVKIELGE SDAHAPLAPW  60
RRLVVAPVGG ETSYGAVGAW WFRFVTVSHT PQDTGSRRGL LRRPEAAPDF GVAFTISGQV  120
MFRWGPSEKL HYMPGTERRF QQPPPAPSTL AVPTRDGDGD EDRAAEREES RSTACFREWE  180
GDAMGVVGVG LQSKEMERAP SAAATPAAGS SRPARQGKGG PDNMRYNFSG VRQRQWGKWV  240
AEIREPNRGR RYWLGTFDNA VDAALAYDRA AVCIYGAHAR ERLNFPAAAA AVTSAATPQC  300
QPTIGSPAAA TDAFQEREVK PVVSGTQGGG LAISSTQQQR GSSWTPAAAK PDEEAWDDCF  360
DDIAMYMDLD AVSDVVPCYR GMKKEDCQFD ELDVSLWPLD G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-13227286563ATERF1
3gcc_A3e-13227286563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961770.16e-60dehydration-responsive element-binding protein 2D
TrEMBLA0A1E5VIG74e-61A0A1E5VIG7_9POAL; Uncharacterized protein
STRINGSi024427m9e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226