PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00094.1.g00540.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 260aa MW: 28101.9 Da PI: 8.1485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00094.1.g00540.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.4e-08	173	198	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h ++Er+RR++iN+ f eL +++P + Zmw_sc00094.1.g00540.1.am.mk 173 HIMAERKRREKINQLFIELSTVIPGL 198 899*********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-7	164	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.607	168	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-7	173	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-5	173	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.66E-7	173	201	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDSSNFMQW AMTTLHHEYH QQAVVVDGDR GEATFPSLHA LREAPQVAQM VQELITETHS 60 TNSWSSGDGE TSTDGSRVGN NNNLPPAAVD HDVWPASPNS AVRQRSCGVT NPPVSPVSWN 120 FSATAAKPQP GGDGVLVETA ARGLPDLAYG SPPARSARLK SSGSMGSLYA LDHIMAERKR 180 REKINQLFIE LSTVIPGLKK SVMVRIHCEN GKAVAVKVLA VIEELHLGIV HANVMPFSAC 240 TLIITITAKA RRKKISPLHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERKRRE
2	177	182	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140919.1	2e-62	uncharacterized protein LOC100272997
Refseq	XP_020403288.1	2e-62	putative HLH DNA-binding domain superfamily protein isoform X1
Refseq	XP_020403289.1	2e-62	putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBL	A0A0A9NVF5	4e-70	A0A0A9NVF5_ARUDO; Uncharacterized protein
STRING	GRMZM2G120021_P01	9e-62	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143