PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00100.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 214aa MW: 23793.1 Da PI: 10.3298

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00100.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.9	7.1e-33	65	121	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Zmw_sc00100.1.g00270.1.sm.mkhc 65 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 121 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-36	63	124	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.498	64	124	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-28	66	121	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.6E-25	67	89	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	69	89	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.6E-25	98	121	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
WKHESRKEPC HITYACFGVR ASAAYQYPDA YYSGMVGPYG TQPGTQFQLH GLTHSRMPLP 60 LEISEEPVYV NAKQYHGILR RRQSRAKAEL EKKVVKARKP YLHESRHQHA MRRARGNGGR 120 FLNTKKIDNG TPNGKADPKK GNAYTLETGI KCSSIALPST FCKAVQGWRP EQNAIWVQKP 180 VPSVEFLLVG GAGRPTASSL SRIGSGPEIY GESL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	65	129	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304143.1	4e-72	nuclear transcription factor Y subunit A-1-like
Refseq	XP_021304146.1	4e-72	nuclear transcription factor Y subunit A-1-like
Swissprot	Q945M9	2e-39	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A1B6QIQ6	1e-70	A0A1B6QIQ6_SORBI; Uncharacterized protein
STRING	Sb01g011220.2	2e-71	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8205	36	49

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]