PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00103.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 131aa MW: 15027.4 Da PI: 10.757

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00103.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	29.3	1.2e-09	11	45	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + +Tp+WR +++LCnaC ++ r g+ Zmw_sc00103.1.g00160.1.am.mk 11 CLQCDSAETPQWRLRLLRQIMLCNACDVRLRADGV 45 899***********************999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.095	5	59	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.09E-9	5	53	No hit	No description
SMART	SM00401	2.8E-5	5	56	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	7.3E-9	6	59	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.1E-7	11	45	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MVRPTKKMKR CLQCDSAETP QWRLRLLRQI MLCNACDVRL RADGVRRETE QRAAQRRARH 60 AAACGAGLTG SWQALVKDHQ PVTLFLQVDL HRRCGYRAVH QVRGGVDQQV AEPAVAMPWA 120 TMNEQHREIF I

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24941	2	5