PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00105.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 611aa MW: 66676.4 Da PI: 8.9637

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00105.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.7e-06	445	486	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r RR+ri ++ +eL +l+P +ls ae+L +A +++k Lq Zmw_sc00105.1.g00080.1.am.mk 445 ARERRRRISQKTAELSRLIPGgH------RLSTAEMLHEAAHHVKLLQ 486 5889999***********955......9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.426	436	485	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-9	440	495	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	442	491	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-6	442	492	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-6	444	489	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MATTTTLATT ATLGDHALRA ATAPTLLRQV LIFLAPALWG FVATRWTGIL PARGGILPSL 60 TALSRQTALQ WPRQVRGVHM MAKQHVQTEI SKEKKQCSST LDEITDRTPV IWSPASGRAW 120 VFFLPCRGSD ELMRRSRLVL AAECRMRDCV SRGDLSCSVP LLIVLSEARI SHDHNSVSKW 180 TRRTIAAPVL LDPADDTNWS WPRRQTSGKR RRRHVGGGYT KCGGGASKER RTRMKSRTRA 240 VDWPRIRRPS LGGVESCCPP PPPLPSQNSV SSSAQQPPMA LSFHPTTAPV FGHGLPAPDA 300 ADVTSFLHDV HPEVSDALLG FVYDPLDAAS TDAVLEDLFR IPNDADAFTT GPVVDDCDVS 360 GFLGPIEDRF LTEVIEVEQH CDKKLRTACN CNQQAPAALP EFLTEFDLPP PPLKQPPTPL 420 TFVHGADDAK KPGGNGGQSV QSTAARERRR RISQKTAELS RLIPGGHRLS TAEMLHEAAH 480 HVKLLQAQVG MLALMRSVGS SENEKLPIAA AQEQMHALLV SGSVQERLTA ERKCLVPRKL 540 VDAMARDKAV KSNPLVNRDL TRFLASLEQQ PPLACIRART AASLFAENAV RRAAGAVVCW 600 FLTPDPDDVC P

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MATTTTLATT ATLGDHALRA ATAPTLLRQV LIFLAPALWG FVATRWTGIL PARGGILPSL  60
TALSRQTALQ WPRQVRGVHM MAKQHVQTEI SKEKKQCSST LDEITDRTPV IWSPASGRAW  120
VFFLPCRGSD ELMRRSRLVL AAECRMRDCV SRGDLSCSVP LLIVLSEARI SHDHNSVSKW  180
TRRTIAAPVL LDPADDTNWS WPRRQTSGKR RRRHVGGGYT KCGGGASKER RTRMKSRTRA  240
VDWPRIRRPS LGGVESCCPP PPPLPSQNSV SSSAQQPPMA LSFHPTTAPV FGHGLPAPDA  300
ADVTSFLHDV HPEVSDALLG FVYDPLDAAS TDAVLEDLFR IPNDADAFTT GPVVDDCDVS  360
GFLGPIEDRF LTEVIEVEQH CDKKLRTACN CNQQAPAALP EFLTEFDLPP PPLKQPPTPL  420
TFVHGADDAK KPGGNGGQSV QSTAARERRR RISQKTAELS RLIPGGHRLS TAEMLHEAAH  480
HVKLLQAQVG MLALMRSVGS SENEKLPIAA AQEQMHALLV SGSVQERLTA ERKCLVPRKL  540
VDAMARDKAV KSNPLVNRDL TRFLASLEQQ PPLACIRART AASLFAENAV RRAAGAVVCW  600
FLTPDPDDVC P

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51