PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00107.1.g00600.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 594aa    MW: 63963.6 Da    PI: 6.1098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00107.1.g00600.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.41.2e-961895933374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl++s++++ ++l++ ++++ +s +++  ++l
  Zmw_sc00107.1.g00600.1.sm.mk 189 QLLLECARAVAARDSQRVQQLMWMLNELASPYGDLEQKLASYFLQGLFARLTSSGPRTLRTLAAASDRN-TSFDSTRRTTL 268
                                   79************************************************************9998874.44444444455 PP

                          GRAS  84 .fsevsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.. 153
                                    f+e+sP+  f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++  
  Zmw_sc00107.1.g00600.1.sm.mk 269 rFQELSPWSSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSap 349
                                   6*********************987766667778999************************889***********988889 PP

                          GRAS 154 ...skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdev 227
                                       ++ ++e+g+r++kfA+ +gvpf+f+++++  +l++l+l++L+++      alaVn++ +l  ++  ++     rd++
  Zmw_sc00107.1.g00600.1.sm.mk 350 taaVQRVMREIGQRMEKFARLMGVPFSFQAVHHAgDLAELDLDALDLRDggaTTALAVNCINSLRGVV--PGGALR-RDAF 427
                                   999999************************97767**************888889************9..444444.7*** PP

                          GRAS 228 LklvkslsPkvvvvveqeadh.nse.............sFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                      +++l+P+vv+vve+ead+   +              Fl+ f+e l+++sa +dsle+++p++s+er  +Er+  gr i
  Zmw_sc00107.1.g00600.1.sm.mk 428 AASLRRLEPRVVTVVEEEADLvA-SdgassaeggdseaAFLKVFSEGLRFFSAYMDSLEESFPKTSNERLALERA-AGRVI 506
                                   *******************9954.447999*********************************************.***** PP

                          GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgWkdrpL 367
                                   v++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++llr++  +g+++ e          + ++l Wk++p+
  Zmw_sc00107.1.g00600.1.sm.mk 507 VDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGWSMREAsiddsaagAAGVFLAWKEQPV 586
                                   **************************************************9.888888666777777677788******** PP

                          GRAS 368 vsvSaWr 374
                                   v++SaWr
  Zmw_sc00107.1.g00600.1.sm.mk 587 VWASAWR 593
                                   ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.9161566IPR005202Transcription factor GRAS
PfamPF035144.2E-94189593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEKQSKAKVT HTQWPLSHHT SKEPQSPSYN SRSTTSSGSW SSSHQTNASY NYYYHSTSSG  60
GGGGGQYYYG QHQHQQYYLE PYHEECGNAH HLYMDEDFSS SSSSRQHFHS HGGTVQPPTS  120
SAATPTAPTP PLSTSSTAAG AAHALFEAAD LSYPPDLNLD FSSPASSSGG GGASSAAVGG  180
GAGGRWGSQL LLECARAVAA RDSQRVQQLM WMLNELASPY GDLEQKLASY FLQGLFARLT  240
SSGPRTLRTL AAASDRNTSF DSTRRTTLRF QELSPWSSFG HVAANGAILE SFLEAAAASS  300
EPQRFHILDL SNTFCTQWPT LLEALATRSA DDTPHLSITT VVSAAPSAPT AAVQRVMREI  360
GQRMEKFARL MGVPFSFQAV HHAGDLAELD LDALDLRDGG ATTALAVNCI NSLRGVVPGG  420
ALRRDAFAAS LRRLEPRVVT VVEEEADLVA SDGASSAEGG DSEAAFLKVF SEGLRFFSAY  480
MDSLEESFPK TSNERLALER AAGRVIVDLV SCPASESMER RETAASWARR MRSAGFSPVA  540
FSEDVADDVR SLLRRYREGW SMREASIDDS AAGAAGVFLA WKEQPVVWAS AWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16118259428420Protein SHORT-ROOT
5b3h_E1e-16118259428420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670524.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A060D7Z40.0A0A060D7Z4_MAIZE; GRAS transcription factor (Fragment)
TrEMBLA0A3L6G1W80.0A0A3L6G1W8_MAIZE; Protein SHORT-ROOT 1
STRINGGRMZM2G019060_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]