PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00112.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 228aa MW: 25351.8 Da PI: 5.3125

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00112.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.6	2.4e-23	43	105	70	129
NAM 70 tgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129 ++ r nrat++g+Wkatgkdke+++++ l vg+kktLvfy+grapkgekt W+mheyrle Zmw_sc00112.1.g00110.1.sm.mk 43 NEGRINRATNTGFWKATGKDKEIYQASAMLptiVGMKKTLVFYTGRAPKGEKTGWIMHEYRLE 105 57899******************74433666**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.014	1	142	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-32	19	142	IPR003441	NAC domain
Pfam	PF02365	4.7E-17	22	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MADHQEQEGI RGGVDDCCMN LPPGFRIHPY DEEIITFYLM PKNEGRINRA TNTGFWKATG 60 KDKEIYQASA MLPTIVGMKK TLVFYTGRAP KGEKTGWIMH EYRLEGSGKL YFPTSSSNST 120 ISKGVPDPHA FHEWVICKVF KSSRNKEVHV PQSEEARANN DIDQSTMSFS TSIQFSIGPE 180 DDFLVELGVL CPNMDPTMPF YSTTDASTSV APMMPPMTSM GTMGIDGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-19	19	141	15	164	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-19	19	141	15	164	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-19	19	141	15	164	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-19	19	141	15	164	NO APICAL MERISTEM PROTEIN
3swm_A	3e-19	19	143	18	169	NAC domain-containing protein 19
3swm_B	3e-19	19	143	18	169	NAC domain-containing protein 19
3swm_C	3e-19	19	143	18	169	NAC domain-containing protein 19
3swm_D	3e-19	19	143	18	169	NAC domain-containing protein 19
3swp_A	3e-19	19	143	18	169	NAC domain-containing protein 19
3swp_B	3e-19	19	143	18	169	NAC domain-containing protein 19
3swp_C	3e-19	19	143	18	169	NAC domain-containing protein 19
3swp_D	3e-19	19	143	18	169	NAC domain-containing protein 19
4dul_A	3e-19	19	141	15	164	NAC domain-containing protein 19
4dul_B	3e-19	19	141	15	164	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801540.1	3e-54	NAC domain-containing protein 79-like
Swissprot	Q9FLJ2	8e-32	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1E5V4C4	2e-56	A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRING	Pavir.Ba02955.1.p	3e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27924	3	5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]