PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00113.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 135aa MW: 14307 Da PI: 4.3755

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00113.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	59.4	7.4e-19	5	130	244	374
GRAS 244 qeadh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleea 322 +e+d ++++ + +f+ le+ + +++s++a + ++ +er+ +E+e g ++ va eg+e Wr+r+ +a Zmw_sc00113.1.g00190.1.am.mk 5 SELDAvGDGTVAGEFAARLEMLWRFLESTSAAFKGKDgDERRLLEAE-AGTSVAAGVAGEGRE---------AWRDRMAAA 75 455555899999***************888877776999999999.9*******998.........9**** PP GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374 GF++++++++a+++ak+llrk++ +++++ ++ g++ l Wk++p+ ++S Wr Zmw_sc00113.1.g00190.1.am.mk 76 GFEEAAFDDEAVESAKSLLRKYDgGWEMSAPaaSSAGAVALRWKGQPVSFCSLWR 130 *******************55554443546678888************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.935	1	107	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-16	5	130	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
LVVLSELDAV GDGTVAGEFA ARLEMLWRFL ESTSAAFKGK DGDERRLLEA EAGTSVAAGV 60 AGEGREAWRD RMAAAGFEEA AFDDEAVESA KSLLRKYDGG WEMSAPAASS AGAVALRWKG 120 QPVSFCSLWR SACNV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008656755.1	2e-60	nodulation-signaling pathway 1 protein
Refseq	XP_015689934.1	9e-61	PREDICTED: nodulation-signaling pathway 1 protein
TrEMBL	A0A1E5VYC7	7e-61	A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRING	OB03G30130.1	3e-60	(Oryza brachyantha)
STRING	GRMZM2G110067_P01	7e-60	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6135	28	54