PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00124.1.g00400.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 312aa    MW: 34495.8 Da    PI: 10.9917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00124.1.g00400.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-082382791454
                                   HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                           HLH  14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 
                                   d+iN+ +++L+ellP++s + ++ + s +  L++++ YIksL
  Zmw_sc00124.1.g00400.1.am.mk 238 DEINDLISKLQELLPESSrRRNASRSSASKLLKETCSYIKSL 279
                                   68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.483224279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5238279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-7238298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-8238295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRRPRDATRC DETYCDAWTE GDTRPGCGII AMRRRKKLLP LPRPVGPSVF VLAPRPSRPV  60
AIDAASCSRA FHHHAAQFAP CVQLIFQRQT TATTVRRDEG LPARALGSRS TTTLSAGGPA  120
LAAPTNELQV GRDAAACPSS RVSRSIQSGL MRQSACGWPR PHEGGKERLV LLPARQPGYL  180
LKPKALQREI CCLTVILRVP AGLLKRQQRR RARAPCVRID GEPLPETMSG RRGRISDDEI  240
NDLISKLQEL LPESSRRRNA SRSSASKLLK ETCSYIKSLH REVGDLSDRL SELMSTMDND  300
SPQAEIIRSL LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209LKRQQRR