PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00124.1.g00590.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33081.2 Da    PI: 6.5971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00124.1.g00590.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-202776255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a+++l+g
  Zmw_sc00124.1.g00590.1.sm.mk 27 EYRGVRQRT-WGKWVAEIREP---NKRTRIWLGSFATAEEAALAYDEAARRLYG 76
                                  69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-282686No hitNo description
PROSITE profilePS5103222.4842784IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-302785IPR001471AP2/ERF domain
SMARTSM003808.3E-372790IPR001471AP2/ERF domain
PfamPF008474.2E-142776IPR001471AP2/ERF domain
PRINTSPR003671.8E-102839IPR001471AP2/ERF domain
PRINTSPR003671.8E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RIWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRASV SAAAAHQRLR WLPASARGGG AVAAVPAYGL  120
LNLNAQHNVH VIHQRLQELK NSSPPSKPPQ GSRGPHELMA PLPASSSPCS TVITGVSTCA  180
ALPPPPPLMS CFQALEQTAA TTEMTAGASP CDGEGACVDK PQLDLREFLQ QIGVLKGDEE  240
GAVTKDGFHG EGDVAGAFGN GEFDWDALAA DLNDIAGGHS GAVGVNGAFQ MDNLHEVDQF  300
GSYLPIPVWD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-172884663ATERF1
3gcc_A5e-172884663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985522.11e-156dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-127DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A1E5VLZ91e-157A0A1E5VLZ9_9POAL; Dehydration-responsive element-binding protein 2E
STRINGPavir.Ia04341.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939