PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00131.1.g00260.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 189aa    MW: 21367.2 Da    PI: 10.2582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00131.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-116698336
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                   WT+eEde l +av  + g++Wk+Ia+ ++  Rt
  Zmw_sc00131.1.g00260.1.sm.mk 66 GWTPEEDETLRNAVDAFKGRQWKKIAEFVP-DRT 98
                                  6*****************************.999 PP
2Myb_DNA-binding49.59.9e-1698139648
                                   HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   teEd+++++ vk++G++ W+ Ia+ ++ gR +kqc++rw+++l
  Zmw_sc00131.1.g00260.1.sm.mk  98 TEEDDIIINMVKKHGPRKWSMIASSLN-GRIGKQCRERWHNHL 139
                                   8**************************.*************97 PP
3Myb_DNA-binding32.91.5e-10145178136
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                                   + +WT eE+  +++a++ +G++ W+ Ia+ ++ gR 
  Zmw_sc00131.1.g00260.1.sm.mk 145 KEAWTVEEEHVIANAHRVYGNK-WAEIAKLLP-GRN 178
                                   579*******************.*********.996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-106198IPR009057Homeodomain-like
SuperFamilySSF466893.73E-862100IPR009057Homeodomain-like
SMARTSM0071776397IPR001005SANT/Myb domain
PfamPF139214.0E-56798No hitNo description
PROSITE profilePS5129421.17985143IPR017930Myb domain
SMARTSM007172.0E-898141IPR001005SANT/Myb domain
CDDcd001671.52E-1199139No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2499145IPR009057Homeodomain-like
SuperFamilySSF466891.96E-2399181IPR009057Homeodomain-like
PfamPF139216.1E-1599153No hitNo description
PROSITE profilePS5129410.493144189IPR017930Myb domain
SMARTSM007170.66144187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14146179IPR009057Homeodomain-like
CDDcd001672.35E-4147181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPAVKVEERD GTEEKWRNLE VLLPSPSAGT SRGGARMSPV VSSPSDSVSR PSIKRTSGPV  60
RRAKSGWTPE EDETLRNAVD AFKGRQWKKI AEFVPDRTEE DDIIINMVKK HGPRKWSMIA  120
SSLNGRIGKQ CRERWHNHLD PQIKKEAWTV EEEHVIANAH RVYGNKWAEI AKLLPGRNTL  180
QSGEVDRIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-39631775142MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-39631775142MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809062.13e-78transcription factor MYB3R-2-like isoform X1
RefseqXP_025809063.15e-82transcription factor MYB3R-2-like isoform X2
SwissprotQ0JHU71e-64MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0A9DCG72e-78A0A0A9DCG7_ARUDO; Uncharacterized protein
STRINGLPERR05G15070.12e-72(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]