PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00132.1.g00550.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 255aa MW: 28324 Da PI: 6.0965

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00132.1.g00550.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	104	129	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G+ C FaHg Zmw_sc00132.1.g00550.1.am.mk 104 GEPCPDFQR-RpgaACPRGNACAFAHG 129 589**99.558***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.873	101	131	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.047	101	130	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.8E-6	104	133	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	105	129	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	139	162	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVSREQNHSH DYEHLMLDPA ALGVSWAEPA ALDIPPPLLA ALVEYLSAAG GGDWDAEADD 60 EFMMYDFKIR RCARARSHDW TSCPYAHPGE AARRRDQRRV SYTGEPCPDF QRRPGAACPR 120 GNACAFAHGT FELWLHPSRY RTRACRAGVS CRRRVCFFAH TAAELRAAPK VEESPLSLSL 180 SPKSTLASLW ESPPVSPVQG RRWIDAADEA DEMKDLMLAM RELSFRKAAA SSAPVLPLVT 240 EEDGPDLGWV SELVM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303637.1	1e-147	zinc finger CCCH domain-containing protein 37-like
Swissprot	Q65X92	1e-126	C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A1Z5R4P2	1e-146	A0A1Z5R4P2_SORBI; Uncharacterized protein
STRING	GRMZM2G004795_P01	1e-129	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11209	19	26

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]