PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00132.1.g00740.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 123aa    MW: 14091.8 Da    PI: 9.9608
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00132.1.g00740.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.6e-36181092102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye++ed+++++++sw   g sfvv+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+
  Zmw_sc00132.1.g00740.1.am.mk  18 FLIKTYEMVEDPATNRVVSWGPGGASFVVWNPPEFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 89 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+++ll++i+r+k 
  Zmw_sc00132.1.g00740.1.am.mk  90 NEDFIRGHTHLLKNIHRRKP 109
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.79E-3813107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-4014107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6214107IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3218107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-211841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-215668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-216981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEGSQSRSGG GSSSPPPFLI KTYEMVEDPA TNRVVSWGPG GASFVVWNPP EFSQELLPKY  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIRGHTHL LKNIHRRKPV HSHSPQNQVN  120
APL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-281010712120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656477.14e-74heat stress transcription factor A-4d
SwissprotQ93VB59e-68HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A446J9C63e-74A0A446J9C6_TRITD; Uncharacterized protein
TrEMBLM7Y9W93e-74M7Y9W9_TRIUA; Heat stress transcription factor A-4d
STRINGTRIUR3_18146-P15e-75(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]