PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00146.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 176aa    MW: 19322 Da    PI: 10.6289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00146.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS23.75.5e-08124981118
                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfd 118
                                    +l+++ sP+++++  +aN aI+eav  ++++H +Df 
  Zmw_sc00146.1.g00090.1.am.mk  12 SQLLHDRSPCFRLALHAANVAIVEAVGDHRAIHLVDFX 49 
                                   57899*******************************96 PP
2GRAS41.52e-1353124104172
                          GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeel 172
                                   eav  ++++H +Dfd+s + Q +aL q La+R+ +  sl++T++ +p+s     ++ +l +++erL+k+A+++
  Zmw_sc00146.1.g00090.1.am.mk  53 EAVGDHRAIHLVDFDVSAP-QHAALVQYLADRRVSGTSLKVTAITDPSSPfaqsQTATLPAVEERLKKLADRV 124
                                   899999**********987.99************************998889999999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.1161176IPR005202Transcription factor GRAS
PfamPF035141.9E-51249IPR005202Transcription factor GRAS
PfamPF035147.1E-1153124IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
LLRRGRVLGS QSQLLHDRSP CFRLALHAAN VAIVEAVGDH RAIHLVDFXX XXEAVGDHRA  60
IHLVDFDVSA PQHAALVQYL ADRRVSGTSL KVTAITDPSS PFAQSQTATL PAVEERLKKL  120
ADRVRNAGLD DGGSQGRGRR ELLQHPCSAQ SQKGTRRQRQ VVAVPFFFFL IVGKTD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668998.12e-41scarecrow-like protein 8
TrEMBLA0A060CY615e-40A0A060CY61_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G109869_P018e-41(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2492236