PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00154.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 287aa MW: 29463.6 Da PI: 7.4053

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00154.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25.9	2.9e-08	96	115	4	23
DUF702 4 gtasCqdCGnqakkdCaheR 23 g++sCqdCGnqakkdCah+R Zmw_sc00154.1.g00300.1.am.mk 96 GGVSCQDCGNQAKKDCAHQR 115 6789***************9 PP
2	DUF702	84.4	2.8e-26	133	207	78	152
DUF702 78 lkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 ++ +++ ++++ ++ss+++++ + ++++P+evsse vfrcvr++ vd++++e+aYqt+vsigGhvfkGiL+d G+ Zmw_sc00154.1.g00300.1.am.mk 133 KRPRARLTVATPTTSSGDQQMVTVAERFPREVSSETVFRCVRLGPVDQADAEVAYQTSVSIGGHVFKGILQDVGP 207 344556778889999***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.2E-5	97	115	IPR007818	Protein of unknown function DUF702
Pfam	PF05142	2.9E-23	127	207	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	7.6E-20	159	207	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAGFPLGGGG HHSRDEPAPS VPQVHPSDAA SFLYAARAGG GLQLWQQHEH QHPFYASNVI 60 RFSSDDSPGA APLLTGAAAS SSSSRGARGS GGAVGGGVSC QDCGNQAKKD CAHQRXXXXX 120 XXXXXXXSRD VTKRPRARLT VATPTTSSGD QQMVTVAERF PREVSSETVF RCVRLGPVDQ 180 ADAEVAYQTS VSIGGHVFKG ILQDVGPTCL ASVGGSGSGP AIEYHHFRHA GDGSPPSTTP 240 AGEAGGGGGV AGNIIVSSAV VMDPYPTPGP YGAFPAGMSF FHGHPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008670344.1	1e-107	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1D6ETR1	1e-105	A0A1D6ETR1_MAIZE; Protein SHI RELATED SEQUENCE 1
STRING	GRMZM2G080295_P01	1e-106	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124