PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00158.1.g00460.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 307aa MW: 32364.3 Da PI: 9.2873

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00158.1.g00460.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.4e-09	38	87	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+Er RR++++s +L +l+Pk +s K ++ L +A YIk+L Zmw_sc00158.1.g00460.1.am.mk 38 RKEIERMRRQHMKSLCTKLVSLIPKeH---YSSKdtMTQLGSLDEAAAYIKKL 87 579********************55...4444459************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.97E-10	25	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.01	33	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.69E-5	38	91	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-12	38	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-6	39	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-6	39	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEKAKKSSSS DTAAAGGKKS STSNNNSGSS GTTAAVERKE IERMRRQHMK SLCTKLVSLI 60 PKEHYSSKDT MTQLGSLDEA AAYIKKLKER VDDLQQKRSS AQLLASLRGG GVGASTSAAA 120 ATVSSDAGSS EEAAVAAEDE AVAPVVELRL REDDSSLDVV LISSVDRPFK MHEVVTVLEE 180 EGAEIINANF SVAGGKIFYT IHSRLVGVRV LAEHAAALRA SAPAVTVVSS SVDTSSRHRA 240 RSTDRCRSGG DRAHCRSTAG TVACVRHAGR RQHGYASRAR VARCGQASAD DDALMCRSSL 300 LSLVSMA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967960.1	8e-74	transcription factor bHLH162
Refseq	XP_012701590.1	8e-74	transcription factor bHLH162
Refseq	XP_025818432.1	2e-73	transcription factor bHLH162-like
TrEMBL	A0A1E5VNC8	6e-75	A0A1E5VNC8_9POAL; Uncharacterized protein
STRING	Pavir.Ea00786.1.p	2e-76	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133