PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00159.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 243aa MW: 26417.4 Da PI: 7.7649

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00159.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.6	5.7e-10	72	98	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f +G+C y + C+FaHg+ Zmw_sc00159.1.g00230.1.am.mk 72 YKTRLCERFESGGWCAYEEACTFAHGR 98 9************************96 PP
2	zf-CCCH	23.9	7.5e-08	143	161	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+ GtC+yGd+C++aHg Zmw_sc00159.1.g00230.1.am.mk 143 EFRDKGTCRYGDKCNYAHG 161 57778*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.0E-15	66	104	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-9	70	102	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0067	71	98	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.742	71	99	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.4E-8	72	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-4	137	162	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-6	138	163	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-7	139	162	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.704	140	163	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	141	161	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MENESNATAS GNAGHNSSWE GSSVIVLPAE SAAARPKSQQ QCGATRPQQR EKEQQQQPGA 60 ELVPEPPAKV FYKTRLCERF ESGGWCAYEE ACTFAHGRAE LRPPLPLPPT FRRSRPAPPP 120 PADADDSWRA RFLYVGAGKV CFEFRDKGTC RYGDKCNYAH GTAAVQPTDT VYHTGPDPAR 180 KSATSPARAF SPGSSIYAPA TTRAFPPGHD VVDGPQGEVK PTPLELLSRK KLSGIYGDWP 240 EDF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819424.1	3e-41	zinc finger CCCH domain-containing protein 1-like
TrEMBL	A0A1E5VJ66	1e-44	A0A1E5VJ66_9POAL; Uncharacterized protein
STRING	Pavir.Ea00381.1.p	6e-42	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13364	20	30